API that simulates sequencing reads using wgsim, which was compiled to WebAssembly and runs as a Cloudflare Worker.
For details, check out this blog post or see the source code on GitHub.
APIs
- Run wgsim:
wgsim.sandbox.bio/api/v1/sequences - Reference genomes:
wgsim.sandbox.bio/api/v1/references
URL Parameters
- chrom: Chromosome - default:
chr1 - start: Start position - default:
random - stop: Stop position - default:
start + 1e3 - length: Sequence length - default:
70 - n: Number of sequences per chunk - default:
10 - ref: Ref genome - default:
hg38(only hg38 supported) - error: Base error rate - default:
0.02 - indel_frac: Fraction of indels - default:
0.15 - indel_extend: Probability an indel is extended - default:
0.3 - mutation_rate: Mutation rate - default:
0.001 - seed: Random seed - default:
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